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AT3G13300.1

Arabidopsis thaliana [ath]

Transducin/WD40 repeat-like superfamily protein

65 PTM sites : 10 PTM types

PLAZA: AT3G13300
Gene Family: HOM05D001876
Other Names: VARICOSE; VCS
Uniprot
Q9LTT8

Link out to other resources with this protein ID : TAIR   |   PeptideAtlas   |   ARAPORT   |   PhosPhAt

For each protein all PTMs are highlighted by default in the respective protein sequence (right-hand side). One can adjust a selection of PTMs in the PTM table on the left-hand side. In addition, functional protein domains and sites can be underlined if desired.

In the PTM table per PTM the PTM position and type is indicated, as well as the plain peptide sequence that was identified by mass spectrometry. The respective proteomics study is indicated by a number, providing a link to consult the experimental details. Additional PTM meta-data includes various confidence measures such as peptide score provided by search algorithms, posterior error probability (PEP), precursor mass deviation (in ppm) and modification site probability. The available confidence meta-data can be consulted in the extended PTM table by clicking SHOW CONFIDENCE. However, in the default PTM table, a color-coding of confidence is provided with green indicating high confidence, olive medium confidence, grey low confidence, and no color an unassigned confidence. More details regarding this confidence assignment can be consulted in the tutorial or the Plant PTM Viewer manuscript.

Besides confidence measures, log2 fold changes between two conditions with significance values (P- or Q-values) are shown if provided in the respective publication. Log2 fold changes are colored in heatmap-like gradient (green = induced, red = repressed) and significant values are highlighted in green. To determine significance, we employed the threshold used in the respective publication. For more details on the quantitative measurements we refer to the experimental details and respective publication, as methodologies can differ.

On the bottom of the page one can send the whole protein or a part of the protein (i.e. a functional domain) to PTM Blast. This will display aligned protein sequences that potentially report aligned PTMs.

PTMs

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Results
PTM Type
Mod AA
Pos
Peptide
Exp ID
Conf
nt A 2 ASSPGNTNPHNTPPFD99
nta A 2 ASSPGNTNPHNTPPFD99
119
og T 86 TLSYPTPPLNLQSPR81
ph T 86 TLSYPTPPLNLQSPR60
114
ph S 88 TLSYPTPPLNLQSPR83
84b
85
88
94
100
109
114
ph T 91 TLSYPTPPLNLQSPR18a
114
ph S 98 TLSYPTPPLNLQSPR18a
38
43
44
45
48
60
83
84a
84b
85
88
94
100
106
109
111a
111b
111c
111d
114
136
ph S 142 SFPGGSGPIR88
114
ph S 147 SFPGGSGPIRVPSCK48
83
84b
88
94
SFPGGSGPIR88
114
ph S 154 SFPGGSGPIRVPSCK44
48
83
84b
88
94
109
111a
111b
111c
111d
VPSCKLPK114
nt L 163 LIGEHAVYDVDVR167b
sno C 340 GEVFSAEAPLQCPLDK169
so C 452 CTQTLDLK110
ph S 574 SDSSVSREANLVEGMSEPSGLKPTDLPSVDSVPKPSIIVNR48
ph S 584 SDSSVSREANLVEGMSEPSGLKPTDLPSVDSVPKPSIIVNR48
ph S 587 EANLVEGMSEPSGLKPTDLPSVDSVPKPSIIVNR114
ph S 596 EANLVEGMSEPSGLKPTDLPSVDSVPKPSIIVNR114
ph S 599 EANLVEGMSEPSGLKPTDLPSVDSVPKPSIIVNR114
ph S 612 SESANKLSFPSAEATSQAIVPPNGEPK48
114
ph S 620 LSFPSAEATSQAIVPPNGEPK114
ph S 625 LSFPSAEATSQAIVPPNGEPK114
fuc S 645 TSGLPSQTSGAGSAYATLPQLPLSPR162
ph S 649 TSGLPSQTSGAGSAYATLPQLPLSPR84b
85
100
ph S 660 TSGLPSQTSGAGSAYATLPQLPLSPRLSSK94
100
TSGLPSQTSGAGSAYATLPQLPLSPR38
48
60
61a
84b
85
94
100
106
109
111a
111b
111c
111d
114
ph S 664 LSSKLSGYHTPVEAIEPVIPHHELGGK44
100
ph S 665 LSSKLSGYHTPVEAIEPVIPHHELGGK44
100
114
ph S 668 LSSKLSGYHTPVEAIEPVIPHHELGGK44
LSGYHTPVEAIEPVIPHHELGGK44
109
114
ph T 672 LSGYHTPVEAIEPVIPHHELGGK44
114
ph T 690 TPSADYSVDR114
ph S 692 TPSADYSVDR60
83
84b
85
88
100
106
109
114
ph S 696 TPSADYSVDR84b
88
114
nt N 708 NLDVSSVEEISR51a
51b
ph S 712 NLDVSSVEEISR106
114
ph S 713 NLDVSSVEEISR44
59
83
88
106
114
ph S 718 NLDVSSVEEISR114
ph S 720 SKDSNVTPDDDVSGMR114
nt D 722 DSNVTPDDDVSGMR51c
ph S 723 SKDSNVTPDDDVSGMR88
114
ph T 726 DSNVTPDDDVSGMR114
ph S 732 SKDSNVTPDDDVSGMRSPSAFFK48
DSNVTPDDDVSGMRSPSAFFK83
DSNVTPDDDVSGMR114
ph S 736 SKDSNVTPDDDVSGMRSPSAFFK48
85
114
DSNVTPDDDVSGMRSPSAFFK83
88
109
SPSAFFK109
111a
111b
111c
111d
ph S 738 DSNVTPDDDVSGMRSPSAFFK59
83
SPSAFFK43
83
109
114
ub K 791 DTEVEVKEISEAR40
ph S 798 STQNGEINDHDETENCTSENR88
114
ph T 810 STQNGEINDHDETENCTSENR84b
ox C 813 STQNGEINDHDETENCTSENR47
sno C 813 STQNGEINDHDETENCTSENR90b
nt S 824 SQVSNLSTE99
ph S 824 VFCSQVSNLSTEMAR83
94
109
114
ph S 827 VFCSQVSNLSTEMAR18a
32
38
48
61a
83
84a
85
88
94
97
100
106
109
114
136
ph S 830 EKVFCSQVSNLSTEMAR114
VFCSQVSNLSTEMAR18a
48
61a
83
85
88
100
106
109
111a
111b
111c
111d
ph T 831 VFCSQVSNLSTEMAR61a
83
106
ph S 840 DCYPSTEGTFIPGESK83
109
114
ph T 841 DCYPSTEGTFIPGESK83
85
ph T 844 DCYPSTEGTFIPGESK83
114
ph S 850 DCYPSTEGTFIPGESK114
ph S 863 AGDESGVDSR88
nt Q 942 QLSNAATGPIGKESKR119
ph S 944 QLSNAATGPIGK88
114
ph S 972 SSKSNADALWAR88
SNADALWAR114
ac K 987 IQEETVKNEK101
ph S 1043 TVSSAITESFQR114
ph S 1138 FDSGHSQLAHTLK83
88
100
109
114
ph S 1156 ESITSASSVAQALSR83
114
ph S 1193 NLLALAAAGANSGGSNSLVTQLSGGPLGALLEK44
100

Sequence

Length: 1344

MASSPGNTNPHNTPPFDLGILFKPSSNPYPPPAASYPPPTGPFLHNQYDQQHYAPPGISAQPSPVTQQQQDVSSSSAATNLHPQRTLSYPTPPLNLQSPRSNHNPGTHILALLNNTNNGAPVANQEPSHQLPVVNHNEIARSFPGGSGPIRVPSCKLPKGRRLIGEHAVYDVDVRLQGEIQPQLEVTPITKYGSDPQLVVGRQIAVNKVYICYGLKGGNIRVLNINTALRSLFRGHSQRVTDMAFFAEDVDMLASVSLDGKVFVWKISEGSEGEDQPQITGKIVLALQILGEEDTKHPRVCWHCHKQEILVVSIGKHVLRIDTTKVGRGEVFSAEAPLQCPLDKLIDGVQIVGKHDGEVTDLSMCQWMTTRLVSSSVDGTIKIWQDRKAQPLVVLRPHDGHPVSSATFVTSPERPDHIILITGGPLNREMKIWVSAGEEGWLLPADAESWRCTQTLDLKSSTEPRAEEAFFNQVIALSEAGLLLLANAKRNALYAVHLDYGSSPVGTRMDYLSEFTVTMPILSFIGTNDPPEEPIVKVYCVQTLAIQQYTLDLCLCLPPPIENMGLEKSDSSVSREANLVEGMSEPSGLKPTDLPSVDSVPKPSIIVNRSESANKLSFPSAEATSQAIVPPNGEPKTSGLPSQTSGAGSAYATLPQLPLSPRLSSKLSGYHTPVEAIEPVIPHHELGGKTPSADYSVDRQMDAVGERNLDVSSVEEISRSKDSNVTPDDDVSGMRSPSAFFKHPTHLVTPSEILMGVSSAEASITTEDRRDRDANIQDVNNDPRDTEVEVKEISEARSTQNGEINDHDETENCTSENREKVFCSQVSNLSTEMARDCYPSTEGTFIPGESKAYGQPIKAGDESGVDSRGGPAKLLKGKKQKAKNSQGPGLSSTSSNVANLADSFNEQSQSLSHPMTDLLPQLLAMQETMNQVMASQKEMQRQLSNAATGPIGKESKRLEVALGRMIEKSSKSNADALWARIQEETVKNEKALRDHAQQIVNATTNFMSKELNAMFEKTIKKELAAIGPALARSVVPVIEKTVSSAITESFQRGIGDKAVNQLDKSVNIKLEATVARQIQAQFQTSGKQALQEGLRSSVESSVIPSFEKACKAMFDQIDSAFQKGIAEHTNAAQQRFDSGHSQLAHTLKESITSASSVAQALSRELAETQRNLLALAAAGANSGGSNSLVTQLSGGPLGALLEKVEAPMDPTTELSRLISERKYEESFTSALQRSDVSIVSWLCSQVDLRGLLAMNPLPLSQGVLLSLLQQLACDISKDTSRKLAWMTDVVAAINPSDQMIAVHARPIFEQVYQILHHHRNAPGSDVSAIRLIMHVINSMLMGCK

ID PTM Type Color
nt N-terminus Proteolysis X
nta N-terminal Acetylation X
og O-GlcNAcylation X
ph Phosphorylation X
sno S-nitrosylation X
so S-sulfenylation X
fuc O-Fucosylation X
ub Ubiquitination X
ox Reversible Cysteine Oxidation X
ac Acetylation X
Multiple types X

Domains & Sites

Clear highlighted range 
Interpro Domains
Show IPR ID From To
IPR032401 186 498

BLAST


Perform a BLAST search for this sequence, or a part of this sequence (minimum 50 characters)
A downloadable tutorial can be found here